Instead of asking about what issues there were, I'll ask about the positives. There were definitely more positives today than negatives.. I'll list a few that stood out to me:
Delano Howell - He was all over the field. Especially remember the TD saving tackle against Boldin and numerous run stopping plays.
Bradshaw - He ran really well and was a good outlet for Luck.
The Offensive Line - Anthony Castanzo pretty much owned Aldon Smith for the majority of the game. Best game from him? Also the run blocking continues to be a major asset. I thought this was their strongest game of the season. Maybe Satele should be benched indefinitely.
Luck - No turnovers. He also ran for a few first downs. Most importantly no turnovers. I don't remember him even forcing it to Reggie or any of the other WRs.
DHB - No drops.
Secondary - Kaepernick didn't have anywhere to throw the ball. Coverage in the secondary obviously gets major credit. Very fitting that Kap threw an INT to seal the game.
Mathis - Applied good pressure. Got at least 1 sack.
Pagano - The team actually scored points in the 2nd half... they weren't all that predictable either. They ran the ball because they were dismantling SF up front. I also like that they kept giving the ball to Bradshaw because he deserved to get it over Richardson.
Richardson - Picked up at least one blitzer that saved Luck's ***.
What were you most impressed with?